@article{Koehl:2021a,
author = {P. Koehl and H. Orland and M. Delarue},
title = {Parameterizing elastic network models to capture the dynamics of proteins},
journal = {J.\ Chem.\ Phys.},
volume = {43},
pages = {1643},
year = {2021}
}
@article{Koehl:2021b,
author = {P. Koehl and M. Delarue and H. Orland},
title = {Simultaneous identification of multiple binding sites in proteins: A statistical mechanics approach},
journal = {J.\ Phys.\ Chem.\ B},
volume = {125},
pages = {5052},
year = {2021}
}
@article{Koehl:2021c,
author = {P. Koehl and H. Orland},
title = {Fast computation of exact solutions of generic and degenerate assignment problems},
journal = {Phys.\ Rev. E},
volume = {103},
pages = {042101},
year = {2021}
}
@article{Koehl:2021d,
author = {P. Koehl and M. Delarue and H. Orland},
title = {Physics approach to the variable-mass optimal-transport problem},
journal = {Phys.\ Rev. E},
volume = {103},
pages = {012113},
year = {2021}
}
@article{Koehl:2019a,
author = {P. Koehl and M. Delarue and H. Orland},
title = {Statistical physics approach to the optimal transport problem},
journal = {Phys.\ Rev.\ Lett.},
volume = {123},
pages = {040603},
year = {2019}
}
@article{Koehl:2019b,
author = {P. Koehl and M. Delarue and H. Orland},
title = {Optimal transport at finite temperature},
journal = {Phys.\ Rev.\ E},
volume = {100},
pages = {013310},
year = {2019}
}
@article{Koehl:2019c,
author = {P. Koehl and M. Delarue},
title = {Coarse-grained dynamics of supramolecules: Conformational changes in outer shells of Dengue viruses},
journal = {Prog.\ Biophys.\ Molec.\ Biol.},
volume = {143},
pages = {20},
year = {2019}
}
@article{Guan:2019,
author = {J. Guan and F. Hsieh and P. Koehl},
title = {DCG++: A data-driven metric for geometric pattern recognition},
journal = {{PloS} One},
volume = {14},
pages = {e0217838},
year = {2019}
}
@article{Hsieh:2019,
author = {F. Hsieh and O. Lee and C. Heitkamp and H. Heymann and S. E. Ebeler and R. B. Boulton and P. Koehl},
title = {Unraveling the regional specificities of Malbec wines from Mendoza, Argentina and from Northern California},
journal = {Agronomy},
volume = {9},
pages = {234},
year = {2019}
}
@article{Koehl:2019d,
author = {P. Koehl and H. Orland and M. Delarue},
title = {Numerical encodings of amino acids in multivariate Gaussian modeling of protein multiple sequence alignments},
journal = {Molecules},
volume = {24},
pages = {104},
year = {2019}
}
@article{Hu:2018,
author = {H. Hu and K. Ataka and A. Menny and Z. Fourati and L. Sauguet and P.-J. Corringer and P. Koehl and J. Heberle and M. Delarue},
title = {Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel},
journal = {Proc.\ Natl.\ Acad.\ Sci.\ (USA)},
volume = {115},
pages = {E12172-E12181},
year = {2018}
}
@article{Vaziri:2018,
author = {S. Vaziri and P. Koehl and S. Aviran},
title = {Extracting information from RNA SHAPE data: Kalman filtering approach},
journal = {{PloS} One},
volume = {13},
pages = {e0207029},
year = {2018}
}
@article{Koehl:2018a,
author = {P. Koehl},
title = {Large eigenvalue problems in coarse-grained dynamic analyses of supra molecular systems},
journal = {J.\ Chem.\ Theo.\ Comput.},
volume = {14},
pages = {3903-3919},
year = {2018}
}
@article{Koehl:2018b,
author = {P. Koehl and M. Delarue},
title = {Combined approaches from physics, statistics, and computer science for ab initio protein structure prediction: ex unitate vires (unity is strength)?},
journal = {F1000 Research},
volume = {7},
pages = {1125},
year = {2018}
}
@article{Saunders:2018,
author = {T.E. Saunders and C.Y. He and P. Koehl and L.L.S. Ong and P.T.C. So},
title = {Eleven quick tips for running an interdisciplinary short course for new graduate students},
journal = {{PLoS} Comput.\ Biol.},
volume = {14},
pages = {e1006039},
year = {2018}
}
@article{Koehl:2017a,
author = {P. Koehl},
title = {Minimum action principle and shape dynamics},
journal = {J.\ R.\ Soc.\ Interface},
volume = {14},
pages = {20170031},
year = {2017}
}
@article{Nojoomi:2017,
author = {S. Nojoomi and P. Koehl},
title = {A weighted string kernel for protein fold recognition},
journal = {BMC Bioinformatics},
volume = {18},
pages = {378},
year = {2017}
}
@article{Hass:2017,
author = {J. Hass and P. Koehl},
title = {Comparing shapes of genus-zero surfaces},
journal = {J.\ Applied Comput.\ Topology},
volume = {1},
pages = {57},
year = {2017}
}
@article{Delarue:2017,
author = {M. Delarue and P. Koehl and H. Orland},
title = {Ab initio sampling of transition paths by conditioned Langevin dynamics},
journal = {J.\ Chem.\ Phys.},
volume = {147},
pages = {152703},
year = {2017}
}
@article{Hsieh:2017,
author = {Y.-C. Hsieh and F. Poitevin and M. Delarue and P. Koehl},
title = {Comparative Normal Mode Analysis of the Dynamics of DENV and ZIKV Capsids},
journal = {Frontiers Mol.\ Biosci.},
volume = {3},
pages = {85},
year = {2017}
}
@article{Koehl:2017b,
author = {P. Koehl and F. Poitevin and R. Navaza and M. Delarue},
title = {The Renormalization Group and Its Applications to Generating Coarse-Grained Models of Large Biological Molecular Systems},
journal = {J.\ Chem.\ Theo.\ Comput.},
volume = {13},
pages = {1424},
year = {2017}
}
@article{Nojoomi:2017b,
author = {S. Nojoomi and P. Koehl},
title = {String kernels for protein sequence comparisons: improved fold recognition},
journal = {BMC Bioinformatics},
volume = {18},
pages = {137},
year = {2017}
}
@article{Koehl:2016a,
author = {P. Koehl},
title = {Minimum action transition paths connecting minima on an energy surface},
journal = {J.\ Chem.\ Phys.},
volume = {145},
pages = {184111},
year = {2016}
}
@article{Fourati:2016,
author = {Z. Fourati and R. R. Ruza and D. Laverty and E. Drege and S. Delarue-Cochin and D. Joseph and P. Koehl and T. Smart and M. Delarue},
title = {Barbiturates bind in the GLIC ion channel pore and cause inhibition by stabilizing a closed state},
journal = {J.\ Bio.\ Chem.},
volume = {292},
pages = {1550},
year = {2016}
}
@article{Edelsbrunner:2016,
author = {H. Edelsbrunner and P. Koehl},
title = {Computational topology for structural molecular biology},
journal = {Handbook of Computational Geometry},
volume = {1},
pages = {},
year = {2016}
}
@article{Koehl:2015a,
author = {P. Koehl and J. Hass},
title = {Landmark-free geometric methods in biological shape analysis},
journal = {J.\ R.\ Soc.\ Interface},
volume = {12},
pages = {20150795},
year = {2015}
}
@article{Fushing:2015,
author = {H. Fushing and C.H. Hsieh and C. Heitkamp and M.A. Matthews P. Koehl.},
title = {Unravelling the geometry of data matrices: effects of water stress regimes on winemaking},
journal = {J.\ R.\ Soc.\ Interface},
volume = {12},
pages = {20150753},
year = {2015}
}
@article{Hass:2015,
author = {J. Hass and P. Koehl},
title = {A metric for genus-zero surfaces},
journal = {arXiv:1507.00798},
pages = {arXiv:1507.00798},
year = {2015}
}
This file was generated by bibtex2html 1.96.