\documentclass[11pt]{book}

\include{Includes/Includes}

\begin{document} 

\thispagestyle{empty}
\input Cover 
\pagecolor{white}
\input ../../MiscPLN/AuthorBio 
\input AboutBook

\frontmatter
\tableofcontents

\mainmatter
\input Intro
\input PerfIssues
\input SharedMem
\input OpenMP
\input CUDA
\input Thrust
\input MsgPassing
\input MPI
% \input Hadoop
\input MapReduce
\input Prefix
\input Matrix
\input Sorting
% \input Combin
\input Fourier
\input Stat
% \input PyThreads

\appendix
\input SystemsTutorial
\input ../../MiscPLN/MatrixReview
\input ../../MiscPLN/R5MinIntro
% \input ../../MiscPLN/PyMiniIntro
% \input R

\end{document}