Patrice Koehl
Department of Computer Science
Genome Center
Room 4319, Genome Center, GBSF
451 East Health Sciences Drive
University of California
Davis, CA 95616
Phone: (530) 754 5121
koehl@cs.ucdavis.edu




Curriculum Vitae

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Titles and Degrees

2014 Founding Director, Data Science Initiative, University of California, Davis
2010 Visiting Professor, Department of Biological Sciences, National University of Singapore
2008 Associate Director (Bioinformatics), Genome Center, University of California, Davis
2008 Professor, Department of Computer Science, University of California, Davis
2004 Associate Professor, Department of Computer Science, University of California, Davis
1995 Habilitation à diriger les recherches, Louis Pasteur University, Strasbourg, France
1989 PhD in Biophysics (Molecular Biology and NMR spectroscopy), Louis Pasteur University, Strasbourg, France
1989 Diplôme d'ingénieur de l'Ecole Centrale des Arts et Manufactures de Paris (equivalent to a M.S. in Engineering); Major: Bioengineering


AWARDS

2006 Alfred P. Sloan fellow
1997 Bronze Medal from the Centre National de la Recherche Scientifique, France (Young Investigator Award)


EMPLOYEMENT AND RESEARCH EXPERIENCE

2014-present Founding Director, Data Science Initiative, University of California, Davis
2010-present Visiting Professor, Department of Biological Sciences, National University of Singapore
2008-present Professor, Department of Computer Science, University of California, Davis
2008-2014 Associate Director (Bioinformatics), Genome Center, University of California, Davis
2004-2008 Associate Professor, Department of Computer Science, University of California, Davis
2001-2004 Senior research associate, Department of Structural Biology, Stanford University
1997-2001 Visiting research associate, Department of Structural Biology, Stanford University
Summer 1991 Visiting Scientist at the Molecular Modeling Laboratory of the University of Kyoto, Japan (sponsored by the HSFP)
Summer 1990 Visiting Scientist at the Stanford Magnetic Resonance Laboratory, Stanford University (sponsored by the UICC)
1989-present Senior research associate (chargé de recherche 1), CNRS, France (on leave of absence since 1997)
1986-1989 Doctoral Research at the University Louis Pasteur of Strasbourg in the Molecular and Structural Carcinogenesis and Mutagenesis Group directed by Dr. R.P.P Fuchs. Supervisor: Prof. Jean-Francois Lefèvre; Defense: April 11, 1989
1984-1986 Staff Scientist at the Lawrence Berkeley Laboratory, Berkeley, California, in the Biophysics Laboratory directed by Dr. A. Chatterjee


TEACHING EXPERIENCE

2010-present Visiting Professor, National University of Singapore. I serve as instructor in two Bioinformatics undergraduate courses in the Biochemistry Department, as well as in one graduate style on structural biology, in the Department of Biological Sciences. I created and teach a new graduate module on Scientific Computing applied to Biology, focusing on data analysis
2004-present Professor, UC Davis, Computer Science Department; I teach four stylees (quarter) each year, both at the graduate and undergraduate levels. I also participate as an instructor in summer programs for high school students
1994-1997 Lecturer, "The Fourier transform and its applications", Université Louis Pasteur, Strasbourg, Physics department (graduate level)
1992-1997 Lecturer, "Distance Geometry and protein structure", Université Louis Pasteur, Strasbourg, Biophysics department (graduate level)
1988-1994 Lecturer, "Introduction to computer science for biologists", Ecole Supérieure de Biotechnologie de Strasbourg (undergraduate level)
1988-1991 Lecturer, "Calculus", Ecole Supérieure de Biotechnologie de Strasbourg (undergraduate level)
1989 Lecturer, "Probability and Statistics", Université Louis Pasteur, Strasbourg, Biology department (undergraduate level)


REVIEWING AND EDITING

Grants Ad-hoc reviewer for NIH (Biophysics) and NSF (computer science) panels. External reviewer for the European Union CORDIS program (FP6 & FP7), and ERC program. External reviewer for the Israeli Science Foundation
Journals Nature, Nature Chemical Biology, Journal of Molecular Biology, Journal of Computational Biology, Journal of Magnetic Resonance, Journal of Biological NMR, Journal de Chimie Physique, Nucleic Acids Research, Proteins: Struct. Func. Genet., Protein Science, Proc. Natl. Acad. Sci. (USA), Structure, BMC Bioinformatics
Member Faculty of 1000 (Protein folding)


INTERESTS

Traveling, reading, writing, hiking, running




  Page last modified 16 September 2014 http://www.cs.ucdavis.edu/~koehl/