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Bernd Hamann - Publications Authored, Co-authored, or Co-edited

2007

[252] Bethel, E.W., Ruebel, O., Weber, G.H., Hamann, B. and Hagen, H. (2007), Visualization and analysis of 3D gene expression data (pdf), technical report TR LBNL-63658, Lawrence Berkeley National Laboratory, Berkeley, California, 3 pages; http://www.osti.gov/bridge/purl.cover.jsp;jsessionid=7CD10A4752BD6943EE9C18348CAA593B?purl=/928239-Ha56ok/.

[253] Dillard, S.E., Bingert, J.F., Thoma, D. and Hamann, B. (2007), Construction of simplified boundary surfaces from serial-sectioned metal micrographs (pdf), in: Chen, M., Hansen, C.D. and Pang, A., eds., IEEE Visualization 2007, IEEE Transactions on Visualization and Computer Graphics 13(6), pp. 1528-1535.

[254] Forte, A.M., Cowgill, E.S., Bernardin, T.S., Kreylos, O. and Hamann, B. (2007), Focusing of 50-80% of total Arabia-Eurasia convergence since 5 Ma along the southern margin of the Greater Caucasus: effect of strain localization along the margins of a rigid inclusion within a young orogen? (doc), poster presentation, abstract number T13H-07, in: Abstract Proceedings of American Geophysical Union (AGU) Fall Meeting 2007, Eos Trans. AGU 88(52), Fall Meeting Suppl., AGU Meetings Department, Washington, D.C.; http://www.agu.org/meetings/fm07/.

[255] Fuller, A.R., Krishnan, H., Mahrous, K.M., Hamann, B. and Joy, K.I. (2007), Real-time procedural volumetric fire (pdf), in: Cohen, J.D., Turk, G. and Watson, B.A., eds., Proceedings of ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games (i3D) 2007, ACM Press, New York, New York, pp. 175-180.

[256] Fuller, A.R., Zawadzki, R.J., Choi, S.S., Wiley, D.F., Werner, J.S. and Hamann, B. (2007), Segmentation of three-dimensional retinal image data (pdf), in: Chen, M., Hansen, C.D. and Pang, A., eds., IEEE Visualization 2007, IEEE Transactions on Visualization and Computer Graphics 13(6), pp. 1719-1726.

[257] Gold, P.O., Gold, R.D., Cowgill, E.S., Kreylos, O. and Hamann, B. (2007), Efficient, off-grid LiDAR scanning of remote field sites (pdf), poster presentation, abstract number G51B-0435, in: Abstract Proceedings of American Geophysical Union (AGU) Fall Meeting 2007, Eos Trans. AGU 88(52), Fall Meeting Suppl., AGU Meetings Department, Washington, D.C. (See http://www.agu.org/meetings/fm07/.)

[258] Gu, S., Anderson, I., Kunin, V., Cipriano, M.J., Minovitsky, S., Weber, G.H., Amenta, N., Hamann, B. and Dubchak, I.L. (2007), TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities (doc), Bioinformatics 23(6), Oxford University Press, pp. 764-766.

[259] Gu, S., Poch, O., Hamann, B. and Koehl, P. (2007), The geometric representation of protein sequences (pdf), in: Hu, X., Mandoiu, I., Obradovic, Z. and Xia, Z., eds., Proceedings of IEEE International Conference on Bioinformatics and Biomedicine 2007 (IEEE BIBM 2007), IEEE Computer Society Press, Los Alamitos, California, pp. 135-142.

[260] Gyulassy, A.G., Duchaineau, M.A., Natarajan, V., Pascucci, V., Bringa, E.M., Higginbotham, A. and Hamann, B. (2007), Topologically clean distance fields (pdf), in: Chen, M., Hansen, C.D. and Pang, A., eds., IEEE Visualization 2007, IEEE Transactions on Visualization and Computer Graphics 13(6), pp. 1432-1439.

[261] Gyulassy, A.G., Natarajan, V., Pascucci, V. and Hamann, B. (2007), Efficient computation of Morse-Smale complexes for three-dimensional scalar functions (pdf), in: Chen, M., Hansen, C.D. and Pang, A., eds., IEEE Visualization 2007, IEEE Transactions on Visualization and Computer Graphics 13(6), pp. 1440-1447.

[262] Hlawitschka, M., Scheuermann, G., Anwander, A., Knoesche, T.R., Tittgemeyer, M. and Hamann, B. (2007), Tensor lines in tensor fields of arbitrary order (pdf), in: Bebis, G., Boyle, R.D., Parvin, B., Koracin, D.R., Paragios, N., Syeda-Mahmood, T., Ju, T., Liu, Z., Coquillart, S., Cruz-Neira, C., Moeller, T. and Malzbender, T.., eds., Proceedings of Third International Symposium on Visual Computing (ISVC 07), Lecture Notes in Computer Science (LNCS) Series, Vol. 4841, Part I, Springer-Verlag, Heidelberg, Germany, pp. 341-350.

[263] Hlawitschka, M., Scheuermann, G. and Hamann, B. (2007), Interactive glyph placement for tensor fields: Glyph packing revisited (pdf), in: Bebis, G., Boyle, R.D., Parvin, B., Koracin, D.R., Paragios, N., Syeda-Mahmood, T., Ju, T., Liu, Z., Coquillart, S., Cruz-Neira, C., Moeller, T. and Malzbender, T.., eds., Proceedings of Third International Symposium on Visual Computing (ISVC 07), Lecture Notes in Computer Science (LNCS) Series, Vol. 4841, Part I, Springer-Verlag, Heidelberg, Germany, pp. 331-340.

[264] Lehner, B., Umlauf, G. and Hamann, B. (2007), Image compression using data-dependent triangulations (pdf), in: Bebis, G., Boyle, R.D., Parvin, B., Koracin, D.R., Paragios, N., Syeda-Mahmood, T., Ju, T., Liu, Z., Coquillart, S., Cruz-Neira, C., Moeller, T. and Malzbender, T.., eds., Proceedings of Third International Symposium on Visual Computing (ISVC 07), Lecture Notes in Computer Science (LNCS) Series, Vol. 4841, Part I, Springer-Verlag, Heidelberg, Germany, pp. 351-362.

[265] Linsen, L., Hamann, B. and Joy, K.I. (2007), Wavelets for adaptively refined third-root-of-two-subdivision meshes (pdf), International Journal of Computers and Applications 29(3), ACTA Press, pp. 223-231.

[266] Luengo Hendriks, C.L., Fowlkes, C.C., Keraenen, S.V.E., Simirenko, L., Weber, G.H., Ruebel, O., Huang, M.-Y., DePace, A.H., Henriquez, C.N., Li, X.-Y., Chu, H.C., Kaszuba, D.W., Beaton, A., Celniker, S.E., Hamann, B., Eisen, M.B., Malik, J., Knowles, D.W. and Biggin, M.D. (2007), Virtual embryos as tools for 3D gene expression analyses (ppt), in: DiNardo, S., Gavis, E.R., Jongens, T.A. and Treisman, J.E., eds., Program and Abstracts Volume of the 48th Annual Drosophila Research Conference, The Genetics Society of America, Bethesda, Maryland, p. 202.

[267] Ruebel, O., Weber, G.H., Huang, M.-Y., Bethel, E.W., Biggin, M.D., Fowlkes, C.C., Luengo Hendriks, C.L., Keraenen, S.V.E., Eisen, M.B., Knowles, D.W., Malik, J., Hagen, H. and Hamann, B. (2007), Applications of visualization and data clustering to 3D gene expression data (ppt), poster presentation, in: Kindlmann, G. and Linsen, L., eds., IEEE Visualization 2007 - Poster Compendium, IEEE Computer Society Press, Los Alamitos, California, pp. 24-25.

[268] Schlemmer, M., Heringer, M., Morr, F., Hotz, I., Hering-Bertram, M., Garth, C., Kollmann, W., Hamann, B. and Hagen, H. (2007), Moment invariants for the analysis of 2D flow fields (pdf), in: Chen, M., Hansen, C.D. and Pang, A., eds., IEEE Visualization 2007, IEEE Transactions on Visualization and Computer Graphics 13(6), pp. 1743-1750.

[269] Schlemmer, M., Hotz, I., Hamann, B., Morr, F. and Hagen, H. (2007), Priority streamlines: a context-based visualization of flow fields (pdf), in: Museth, K., Moeller, T. and Ynnerman, A., eds., Data Visualization 2007 (Proceedings of EuroVis 2007), Eurographics Association, Aire-la-Ville, Switzerland, pp. 227-234.

[270] Sreevalsan-Nair, J., Linsen, L. and Hamann, B. (2007), Topologically accurate dual isosurfacing using ray intersection (pdf), Journal of Virtual Reality and Broadcasting 4(4), The Library, Duesseldorf University of Applied Sciences, 12 pages; http://www.jvrb.org/4.2007/1170/.

[271] Sreevalsan-Nair, J., Van Nieuwenhuyse, E., Hotz, I., Linsen, L., and Hamann, B. (2007), An interactive visual exploration tool for Northern California's water monitoting network (pdf), in: Erbacher, R.F., Roberts, J.C., Groehn, M.T., Boerner, K., eds., Visualization and Data Analysis 2007, Proc. SPIE Vol. 6495, SPIE - The International Society for Optical Engineering, Bellingham, Washington, pp. 649506-1 - 649506-12.

[272] Sreevalsan-Nair, J., Verhoeven, M., Woodruff, D.L., Hotz, I. and Hamann, B. (2007), Human-guided enhancement of a stochastic local search: Visualization and adjustment of 3D pheromone (pdf), in: Stuetzle, T., Birattari, M. and Hoos, H.H., eds., Proceedings of Engineering Stochastic Local Search Algorithms (SLS) 2007, Lecture Notes in Computer Science (LNCS) Series, Vol. 4638, Springer-Verlag, Heidelberg, Germany, pp. 182-186.

[273] Staadt, O.G., Natarajan, V., Weber, G.H., Wiley, D.F. and Hamann, B. (2007), Interactive processing and visualization of image data for biomedical and life science applications (pdf), in: Auer, M., Peng, H. and Singh, A., eds., BMC Cell Biology 8(Suppl 1):S10, special issue, BioMed Central Ltd.

[274] Weber, G.H., Dillard, S.E., Carr, H., Pascucci, V. and Hamann, B. (2007), Topology-controlled volume rendering (pdf), IEEE Transactions on Visualization and Computer Graphics 13(2), pp. 330-341.

[275] Zawadzki, R.J., Fuller, A.R., Choi, S.S., Wiley, D.F., Hamann, B. and Werner, J.S. (2007), Correction of motion artifacts and scanning beam distortions in 3D ophthalmic optical coherence tomography imaging (pdf), in: Manns, F., Soederberg, P.G., Ho, A., Stuck, B.E. and Belkin, M., eds., Ophthalmic Technologies XVII, Proc. SPIE Vol. 6426, SPIE - The International Society for Optical Engineering, Bellingham, Washington, pp. 642607-1--642607-11.

[276] Zawadzki, R.J., Fuller, A.R., Wiley, D.F., Hamann, B., Choi, S.S., and Werner, J.S. (2007), Adaptation of a support vector machine algorithm for segmentation and visualization of retinal structures in volumetric optical coherence tomography data sets (pdf), in: Drexler, W. and Fujimoto, J.G., eds., Journal of Biomedical Optics 12(4), special issue, SPIE - The International Society for Optical Engineering, pp. 041206-1--041206-8.