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Bernd Hamann - Publications Authored, Co-authored, or Co-edited

2006

[216] Ahlborn, B.A., Kreylos, O., Hamann, B. and Staadt, O.G. (2006), A foveal inset for large display environments (pdf), poster presentation, in: Froehlich, B., Bowman, D.A. and Iwata, H., eds., IEEE Virtual Reality 2006, IEEE Computer Society Press, Los Alamitos, California, pp. 281-283.

[217] Bernardin, T.S., Cowgill, E.S., Gold, R.D., Hamann, B. Kreylos, O. and Schmitt, A. (2006), Interactive mapping on 3-D terrain models (pdf), Geochemistry, Geophysics, Geosystems (G^3) 7(10), American Geophysical Union (AGU) and The Geochemical Society.

[218] Bernardin, T.S., Cowgill, E.S., Gold, R.D., Hamann, B. Kreylos, O. and Schmitt, A. (2006), Interactive mapping on virtual terrain models using RIMS (real-time, interactive mapping system) (txt), poster presentation, abstract number IN33A-1331, in: Abstract Proceedings of American Geophysical Union (AGU) Fall Meeting 2006, Eos Trans. AGU 87(52), Fall Meeting Suppl., AGU Meetings Department, Washington, D.C. (See http://www.agu.org/meetings/fm06/waisfm06.html.)

[219] Bethel, E.W., Johnson, C., Hansen, C.D., Parker, S., Sanderson, A., Silva, C.T., Tricoche, X., Pascucci, V., Childs, H.R., Cohen, J.D., Duchaineau, M.A., Laney, D.E., Lindstrom, P., Ahern, S., Meredith, J.S., Ostrouchov, G., Joy, K.I. and Hamann, B. (2006), VACET: Proposed SciDAC2 Visualization and Analytics Center for Enabling Technologies (pdf), in: Tang, W.M., ed., Journal of Physics: Conference Series 46, special issue, Institute of Physics (IOP) Publishing, pp. 561-569; also published as technical report TR LBNL-60413, Lawrence Berkeley National Laboratory, Berkeley, California, http://www.osti.gov/bridge/servlets/purl/927814-wMTiMH/.

[220] Billen, M.I., Kreylos, O., Hamann, B., Jadamec, M.A., Kellogg, L.H., Staadt, O.G. and Sumner, D.Y. (2006), A geoscientist's perspective on immersive 3D data visualization (pdf), KeckCAVES Technical Report TR06-02, Department of Geology, University of California, Davis, California, 8 pages.

[221] Billen, M.I., Kreylos, O., Kellogg, L.H., Hamann, B., Staadt, O.G., Sumner, D.Y. and Jadamec, M.A. (2006), Study of 3D visualization software for geo-science applications (pdf), KeckCAVES Technical Report TR06-01, Department of Geology, University of California, Davis, California, 8 pages.

[222] Crawford, C.W., Kreylos, O., Hamann, B. and Crivelli, S.N. (2006), Visualization of force fields in protein structure prediction (pdf), in: Erbacher, R.F., Roberts, J.C., Groehn, M.T., Boerner, K., eds., Visualization and Data Analysis 2006, Proc. SPIE Vol. 6060, SPIE - The International Society for Optical Engineering, Bellingham, Washington, pp. 606013-1--606013-9.

[223] Dillard, S.E., Natarajan, V., Weber, G.H., Pascucci, V. and Hamann, B. (2006), Tessellation of quadratic elements (pdf), Technical Report TR CSE-2006-21, pp. 1-14, Department of Computer Science, University of California, Davis, California.

[224] Dillard, S.E., Natarajan, V., Weber, G.H., Pascucci, V. and Hamann, B. (2006), Tessellation of quadratic elements (pdf), in: Asano, T., ed., Proceedings of The Seventeenth International Symposium on Algorithms and Computation (ISAAC 2006), Lecture Notes in Computer Science Series, Vol. 4288, Springer-Verlag, New York, New York, pp. 722-731.

[225] Fuller, A.R., Krishnan, H., Mahrous, K.M., Hamann, B. and Joy, K.I. (2006), Real-time procedural volumetric fire (pdf), poster presentation, in: Ren, P. and Phielip, M., eds., Proceedings of ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games (i3D) 2006 - Poster/Demo Compendium, p. 8, ACM Press, New York, New York.

[226] Gregorski, B.F., Wiley, D.F, Childs, H.R., Hamann, B. and Joy, K.I. (2006), Adaptive contouring with quadratic tetrahedra (pdf), in: Bonneau, G.-P., Ertl, T. and Nielson, G.M., eds., Scientific Visualization: The Visual Extraction of Knowledge from Data, Springer-Verlag, Heidelberg, Germany, pp. 3-15.

[227] Gyulassy, A.G., Natarajan, V., Pascucci, V., Bremer, P.-T. and Hamann, B. (2006), A topological approach to simplification of three-dimensional scalar functions (pdf), in: Silva, C.T., Groeller, E. and Rushmeier, H.E., eds., IEEE Transactions on Visualization and Computer Graphics 12(4), special issue, pp. 474-484.

[228] Hotz, I., Feng, Z.X., Hagen, H., Hamann, B. and Joy, K.I. (2006), Tensor field visualization using a metric interpretation (pdf), in: Weickert, J. and Hagen, H., eds., Visualization and Processing of Tensor Fields, Springer-Verlag, Heidelberg, Germany, pp. 269-281.

[229] Kellogg, L.H., Bawden, G.W., Bernardin, T.S., Billen, M.I., Cowgill, E.S., Hamann, B., Jadamec, M.A., Kreylos, O., Staadt, O.G. and Sumner, D.Y. (2006), Interactive visualization to advance earthquake simulation (pdf), KeckCAVES Technical Report TR06-04, Department of Geology, University of California, Davis, California, 23 pages.

[230] Keraenen, S.V.E., Luengo Hendriks, C.L., Fowlkes, C.C., Weber, G.H., Ruebel, O., Huang, M.-Y., Simirenko, L., DePace, A.H., Henriquez, C.N., Peng, H., Sudar, J.D., Hamann, B., Malik, J., Eisen, M.B., Biggin, M.D. and Knowles, D.W. (2006), A morphogenetic framework for analyzing gene expression in Drosophila melanogaster blastoderms (ppt), poster presentation, in: Poster Abstract Proceedings of Integrating Evolution, Development and Genomics 2006, http://www.evodevo.org, p. 37.

[231] Keraenen, S.V.E., Luengo Hendriks, C.L., Fowlkes, C.C., Weber, G.H., Ruebel, O., Huang, M.-Y., Henriquez, C.N,. Peng, H., Simirenko, L., Sudar, J.D., Hamann, B., Malik, J., Eisen, M.B., Biggin, M.D. and Knowles, D.W. (2006), A morphogenetic framework for analyzing gene expression in Drosophila melanogaster blastoderms (ppt), poster presentation, in: Bellen, H.J., Halder, G., Davis, R.L. and Mardon, G., eds., Program and Abstracts Volume of the 47th Annual Drosophila Research Conference, The Genetics Society of America, Bethesda, Maryland, p. 52.

[232] Kil, Y.J., Renzulli, P.A., Kreylos, O., Hamann, B., Monno, G. and Staadt, O.G. (2006), 3D warp brush modeling (pdf), Computers and Graphics 30(4), ELSEVIER, pp. 610-618.

[233] Kreylos, O., Bawden, G.W., Bernardin, T.S., Billen, M.I., Cowgill, E.S., Gold, R.D., Hamann, B., Jadamec, M.A., Kellogg, L.H., Staadt, O.G. and Sumner, D.Y. (2006), Enabling scientific workflows in virtual reality (pdf), in: Hong Wong, K., Baciu, G. and Bao, H., eds., Proceedings of ACM SIGGRAPH International Conference on Virtual Reality Continuum and Its Applications 2006 (VRCIA 2006), ACM Press, New York, New York, pp. 155-162.

[234] Kreylos, O., Billen, M.I., Kellogg, L.H., Hamann, B., Sumner, D.Y., Staadt, O.G. and Jadamec, M.A. (2006), Environment-independent 3D visualization software for geo-science applications (txt), poster presentation, abstract number IN31A-1310, in: Abstract Proceedings of American Geophysical Union (AGU) Fall Meeting 2006, Eos Trans. AGU 87(52), Fall Meeting Suppl., AGU Meetings Department, Washington, D.C. (See http://www.agu.org/meetings/fm06/waisfm06.html.)

[235] Lehner, B., Umlauf, G., Hamann, B. and Ustin, S.L. (2006), Topographic distance functions for interpolation of meteorological data (pdf), in: Hagen, H., Kerren, A. and Dannenmann, P., eds., Visualization of Large and Unstructured Data Sets, GI Lecture Notes in Informatics, Vol. S-4, Gesellschaft fuer Informatik (GI), Bonn, Germany, pp. 119-131.

[236] Luengo-Hendriks, C.L., Keraenen, S.V.E., Fowlkes, C.C., Simirenko, L., Weber, G.H., DePace, A.H., Henriquez, C.N., Kaszuba, D.W., Hamann, B., Eisen, M.B., Malik, J., Sudar, J.D., Biggin, M.D. and Knowles, D.W. (2006), 3D morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline (pdf), BMC Genome Biology 7:R123, BioMed Central Ltd.

[237] Luengo Hendriks, C.L., Keraenen, S.V.E., Fowlkes, C.C., Weber, G.H., Ruebel, O., Huang, M.-Y., Peng, H., DePace, A.H., Simirenko, L., Hamann, B., Sudar, J.D., Malik, J., Eisen, M.B., Biggin, M.D. and Knowles, D.W. (2006), Quantitative imaging describes morphogenetic nuclear movements prior to gastrulation (pdf), poster presentation, in: Bellen, H.J., Halder, G., Davis, R.L. and Mardon, G., eds., Program and Abstracts Volume of 47th Annual Drosophila Research Conference, The Genetics Society of America, Bethesda, Maryland.

[238] Natarajan, V., Wang, Y., Bremer, P.-T., Pascucci, V. and Hamann, B. (2006), Segmenting molecular surfaces (pdf), in: Wolters, H.J. and Hamann, B., eds., Computer Aided Geometric Design 23(6), special issue, pp. 495-509.

[239] Park, S.W., Linsen, L., Kreylos, O., Owens, J.D. and Hamann, B. (2006), Discrete Sibson interpolation (pdf), IEEE Transactions on Visualization and Computer Graphics 12(2), pp. 243-253.

[240] Park, S.W., Yu, H., Hotz, I., Kreylos, O., Linsen, L. and Hamann, B. (2006), Structure-accentuating dense flow visualization (pdf), in: Sousa Santos, B., Ertl, T. and Joy, K.I., eds., Data Visualization 2006 (Proceedings of EuroVis 2006), Eurographics Association, Aire-la-Ville, Switzerland, pp. 163-170.

[241] Ruebel, O., Weber, G.H., Keraenen, S.V.E., Fowlkes, C.C., Luengo Hendriks, C.L., Simirenko, L., Shah, N.Y., Eisen, M.B., Biggin, M.D., Hagen, H., Sudar, J.D., Malik, J., Knowles, D.W. and Hamann, B. (2006), PointCloudXplore: a visualization tool for 3D gene expression data (pdf), in: Hagen, H., Kerren, A. and Dannenmann, P., eds., Visualization of Large and Unstructured Data Sets, GI Lecture Notes in Informatics, Vol. S-4, Gesellschaft fuer Informatik (GI), Bonn, Germany, pp. 107-117.

[242] Ruebel, O., Weber, G.H., Keraenen, S.V.E., Fowlkes, C.C., Luengo Hendriks, C.L., Simirenko, L., Shah, N.Y., Eisen, M.B., Biggin, M.D., Hagen, H., Sudar, J.D., Malik, J., Knowles, D.W. and Hamann, B. (2006), PointCloudXplore: Visual analysis of 3D gene expression data using physical views and parallel coordinates (pdf), in: Sousa Santos, B., Ertl, T. and Joy, K.I., eds., Data Visualization 2006 (Proceedings of EuroVis 2006), Eurographics Association, Aire-la-Ville, Switzerland, pp. 203-210.

[243] Rueda-Velasquez, C.M., Gertz, M., Ludaescher, B. and Hamann, B. (2006), An extensible infrastructure for processing distributed geospatial data streams (pdf), in: Froeschl, K.A. and Grossmann, W., eds., Proceedings of Eighteenth International Conference on Scientific and Statistical Database Management (SSDBM 2006), IEEE Computer Society Press, Los Alamitos, California, pp. 285-288.

[244] Schlemmer, M., Hagen, H., Hotz, I. and Hamann, B. (2006), Clifford pattern matching for color image edge detection (pdf), in: Hagen, H., Kerren, A. and Dannenmann, P., eds., Visualization of Large and Unstructured Data Sets, GI Lecture Notes in Informatics, Vol. S-4, Gesellschaft fuer Informatik (GI), Bonn, Germany, pp. 47-58.

[245] Sreevalsan-Nair, J., Hamann, B. and Linsen, L. (2006), Using ray intersection for dual isosurfacing (pdf), in: Braz, J., Jorge, J.A.P., Dias, M. and Marcos, A., eds., Proceedings of First International Conference on Computer Graphics Theory and Applications (GRAPP) 2006, Institute for Systems and Technologies of Information, Control and Communication (INSTICC) Press, Setubal, Portugal, pp. 34-42.

[246] Staadt, O.G., Ahlborn, B.A., Kreylos, O. and Hamann, B. (2006), A foveal inset for large display environments (pdf), in: Hong Wong, K., Baciu, G. and Bao, H., eds., Proceedings of ACM SIGGRAPH International Conference on Virtual Reality Continuum and Its Applications 2006 (VRCIA 2006), ACM Press, New York, New York, pp. 281-288.

[247] Vivodtzev, F., Linsen, L., Hamann, B., Joy, K.I. and Olshausen, B. (2006), Brain mapping using topology graphs obtained by surface segmentation (pdf), in: Bonneau, G.-P., Ertl, T. and Nielson, G.M., eds., Scientific Visualization: The Visual Extraction of Knowledge from Data, Springer-Verlag, Heidelberg, Germany, pp. 35-48.

[248] Vivodtzev, F., Wiley, D.F., Linsen, L., Jones, J., Amenta, N., Hamann, B. and Joy, K.I. (2006), Automatic feature-based surface mapping for brain cortices (pdf), in: Erbacher, R.F., Roberts, J.C., Groehn, M.T., Boerner, K., eds., Visualization and Data Analysis 2006, Proc. SPIE Vol. 6060, SPIE - The International Society for Optical Engineering, Bellingham, Washington, pp. 60600V-1--60600V-12.

[249] Wolters, H.J. and Hamann, B., eds. (2006), Applications of Geometric Modeling in the Life Sciences (pdf), Computer Aided Geometric Design 23(6), special issue, ISSN 0167-8396, Elsevier, pp. 481-557.

[250] Yamazaki, I., Natarajan, V., Bai, Z. and Hamann, B. (2006), Segmenting point sets (pdf), in: Belyaev, A.G., Suzuki, H. and Spagnuolo, M., eds., Proceedings of International Conference on Shape Modeling and Applications 2006 (SMI '06), IEEE Computer Society Press, Los Alamitos, California, pp. 4-13.

[251] Zawadzki, R.J., Fuller, A.R., Zhao, M., Wiley, D.F., Choi, S.S., Bower, B.A., Hamann, B., Izatt, J.A. and Werner, J.S. (2006), 3D OCT imaging in clinical settings: Toward quantitative measurements of retinal structures (pdf), in: Manns, F., Soederberg, P.G. and Ho, A., eds., Ophthalmic Technologies XVI, Proc. SPIE Vol. 6138, SPIE - The International Society for Optical Engineering, Bellingham, Washington, pp. 8-18.